Remote Computational Project Resource

  • Welcome

Coding

  • Getting Started
    • Introduction to R
    • General resources
    • Asking for help
  • Data Visualisation
    • Making figures in R
    • General Resources
    • Accessibility
  • Tutorials
    • RNA-seq Analysis
    • Survival Analysis
  • Online resources
    • Online textbooks
    • Visual Studio Code Extensions

Data

  • Finding data
    • Sources for biological data
  • Data/file management

Scientific Writing

  • Writing Resources
  • Reading Resources

Communities and fun

  • Communities
  • Computational Biology Adjacent Fun
    • Podcasts
    • Events and Shows
    • Crafting

Getting involved

  • Record of contributions
Powered by Jupyter Book
Contents
  • R
  • Python
  • Data Visualisation
  • Statistics
  • Evolution
  • Linux
  • General Computational Biology

Online textbooks¶

Free online textbooks.

R¶

  • Hands-On programming with R

  • R for Data Science

  • Computational Genomics with R

  • Mastering Shiny - Shiny is a framework for making web applications in R.

  • Advanced R

  • ggplot2: elegant graphics for data analysis - A guide to the Grammar of Graphics used by ggplot2 - for understanding theory.

  • R Graphics Cookbook - The whole book isn’t available online, but some useful information is on the site about making data graphics in R.

  • Data visualisation using R, for researchers who don’t use R

  • Mastering Spark with R

  • Text Mining with R

  • R Markdown: The Definitive Guide

  • RMarkdown for Scientists

  • The Big Book of R - An enormous collection of R-related programming books!

Python¶

  • Research Software Engineering with Python

Data Visualisation¶

  • Fundamentals of Data Visualisation - A guide to effectively communicating your data using figures.

Statistics¶

  • Bayesian Data Analysis

  • Statistical Inference via Data Science: A ModernDive into R and the TidyVerse

  • Introduction to Modern Statistics

  • OpenIntro Statistics

  • Bayes Rules!

  • Modern Statistics for Modern Biology

  • Introduction to Modern Statistics

  • Explained Visually

  • Data Disasters

Evolution¶

  • the TIMETREE of LIFE

  • Practical Computing and Bioinformatics for Conservation and Evolutionary Genomics

Linux¶

  • The Linux Kernel Module Programming Guide

General Computational Biology¶

  • A primer for computational biology

previous

Online resources

next

Visual Studio Code Extensions

By Isabel Birds
© Copyright 2021.