Work

Data Analyst and Member/Director

Jan 2022 - Present
Open Data Services Co-operative

Specialising in publisher and data user support for the International Aid Transparency Initiative.

Research Administrator

July 2015 - Aug 2016
Yorkshire Cancer Research

Industrial Placement as a Research Administrator, extended to include a summer placement. Returned for summer 2017 and 2018.

Education

PhD in Molecular and Cellular Biology

2018 - 2023
Faculty of Biological Sciences, University of Leeds

MNatSci, BSc (1st, Hons) with Industrial Experience

2013 - 2018
Faculty of Mathematics and Physical Sciences, University of Leeds

Research

Data Analyst

Feb - Apr 2021
DECOVID

Project: COVID-19 and Chronic Obstructive Pulmonary Disease.

Three month placement as part of the University of Leeds Team. DECOVID uses data from electronic patient records to answer clinically important questions related to COVID-19.

PhD Project

2018 - 2023
University of Leeds
Dr Julie Aspden, Dr Mary J OConnell, Professor David Westhead

Project: Dissecting the function and molecular evolution of long non-coding RNAs.

Masters Research Project

2017 - 2018
University of Leeds
Dr Julie Aspden

Project: A computational analysis of the conservation of long non-coding RNA and dicistronic genes in Drosophila.

Teaching

Instructor, Workshop on Ribosome Profiling

July 2021
Translation UK

Teaching on a two half-day course for PhD students and postdoctoral researchers. Co-lead for beginners session on analysis workflows and file formats, and facilitating round table discussions.

Remote Masters Project Support

2020 - 2021
University of Leeds

Providing remote support for Masters students transferred from a wet to dry lab project during the Covid-19 pandemic. Featured in the biochemical society webinar series; “How to deliver biomolecular science honours research projects with limited lab bench time”.

Demonstrator, Computational classes

2019 - 2021
University of Leeds

Demonstrator for computational practical classes and courses, teaching undergraduates and post graduate researchers. Lead demonstrator for a computational practical class of 70 students, and responsible for subsequent support and marking of assignments.

Demonstrator, RNA-seq Workshop

2019
LeedsOmics

Demonstrating at an Introduction to RNA-Seq Data Analysis Workshop, teaching post graduate researchers.

Masters Buddy Scheme Leader

2019
University of Leeds

Supervisor, Undergraduate Summer Student

2019
University of Leeds

Invigilator

2018 - 2020
University of Leeds

Peer assisted learning mentor

2014 - 2016
University of Leeds

Projects

Remote Computational Project Resource

An online resource created during the COVID-19 pandemic to support students transferred from wet to remote dry lab projects at short notice.

Outreach

Be Curious
2021

Moderator at live online shows at the University of Leeds annual research open event.

Be Curious
2020

Working as part of a team to create an educational, virtual activity. We prioritised accessibility and affordability.

Discovery Zone
2018

Volunteering on the Athena Swan stand, working with school children to expand their idea of who can be a scientist.

Life with Cancer
2017

Volunteer at a patient event, facilitating discussion around sensitive topics in order to direct future research and initiatives.

Awards

  • The University of Leeds Women’s Rugby League Club Colours
  • The Andrew Cudbertson Shield for Contributions to University Rugby League

Publications

Optimization of Ribosome Footprinting Conditions for Ribo-Seq in Human and Drosophila melanogaster Tissue Culture Cells
Douka, K., Agapiou, M., Birds, I., Aspden, J.L.
Frontiers in Molecular Biosciences (2022)
Cytoplasmic long non-coding RNAs are differentially regulated and translated during human neuronal differentiation
Douka, K., Birds, I., Wang, D., Kosteletos, A., Clayton, S., Byford, A., Vasconcelos, E.J.R., O’Connell, M.J, Deuchars, J., Whitehouse, A., Aspden, J.L.
RNA journal (2021)
Non-coding RNAs as Direct and Indirect Modulators of Epigenetic Regulation
Alfardus, H., Birds, I.
Comprehensive Foodomics (2021)
Long non-coding RNAs and Human Cancer
Alfardus, H., Birds, I.
Comprehensive Foodomics (2021)
Long non‐coding RNAs in development and disease: conservation to mechanisms
Tsagakis, I., Douka, K., Birds, I. and Aspden, J.L.
The Journal of Pathology (2020)